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Author: Mazzamuto Giacomo 

1) Universal autofocus for quantitative volumetric microscopy of whole mouse brains in NATURE METHODS
By: Silvestri L., Mullenbroich MC., Costantini I., Di Giovanna AP., Mazzamuto G., Franceschini A., Kutra D., Kreshuk A., Checcucci C., Toresano LO., Frasconi P., Sacconi L., Pavone FS. Year: 2021 (IF.: 47.990 Cit.: 30 DOI: 10.1038/s41592-021-01208-1)

2) A cellular resolution atlas of Broca’s area in SCIENCE ADVANCES
By: Costantini I., Morgan L., Yang JR., Balbastre Y., Varadarajan D., Pesce L., Scardigli M., Mazzamuto G., Gavryusev V., Castelli FM., Roffilli M., Silvestri L., Laffey J., Raia S., Varghese M., Wicinski B., Chang SB., Chen IA., Wang H., Cordero D., Vera M., Nolan J., Nestor K., Mora J., Iglesias JE., Pallares EG., Evancic K., Augustinack JC., Fogarty M., Dalca AV., Frosch MP., Magnain C., Frost R., van der Kouwe A., Chen SC., Boas DA., Pavone FS., Fischl B., Hof PR. Year: 2023 (IF.: 11.700 Cit.: 7 DOI: 10.1126/sciadv.adg3844)

3) Brain-wide neuron quantification toolkit reveals strong sexual dimorphism in the evolution of fear memory in CELL REPORTS
By: Franceschini A., Mazzamuto G., Checcucci C., Chicchi L., Fanelli D., Costantini I., Passani MB., Silva BA., Pavone FS., Silvestri L. Year: 2023 (IF.: 7.500 Cit.: 1 DOI: 10.1016/j.celrep.2023.112908)

4) Photonic bands, superchirality, and inverse design of a chiral minimal metasurface in NANOPHOTONICS
By: Zanotto S., Mazzamuto G., Riboli F., Biasiol G., La Rocca G. C., Tredicucci A., Pitanti A. Year: 2019 (IF.: 7.491 Cit.: 19 DOI: 10.1515/nanoph-2019-0321)

5) Photostable Molecules on Chip: Integrated Sources of Nonclassical Light in ACS PHOTONICS
By: Lombardi P.; Ovvyan A. P.; Pazzagli S.; Mazzamuto G.; Kewes G.; Neitzke O.; Gruhler N.; Benson O.; Pernice W. H. P.; Cataliotti F. S.; Toninelli C. Year: 2018 (IF.: 7.143 Cit.: 52 DOI: 10.1021/acsphotonics.7b00521)

6) 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy in COMMUNICATIONS BIOLOGY
By: Pesce Luca; Scardigli Marina; Gavryusev Vladislav; Laurino Annunziatina; Mazzamuto Giacomo; Brady Niamh; Sancataldo Giuseppe; Silvestri Ludovico; Destrieux Christophe; Hof Patrick R.; Costantini Irene; Pavone Francesco S. Year: 2022 (IF.: 5.900 Cit.: 19 DOI: 10.1038/s42003-022-03390-0)

7) Necklace state hallmark in disordered 2D photonic systems in ACS PHOTONICS
By: Sgrignuoli F., Mazzamuto G., Caselli N., Intonti F., Cataliotti FS., Gurioli M., Toninelli C. Year: 2015 (IF.: 5.404 Cit.: 22 DOI: 10.1021/acsphotonics.5b00422)

8) Autofluorescence enhancement for label‑free imaging of myelinated fibers in mammalian brains in SCIENTIFIC REPORTS
By: Costantini I., Baria E., Sorelli M., Matuschke F., Giardini F., Menzel M., Mazzamuto G., Silvestri L., Cicchi R., Amunts K., Axer M., Pavone F.S. Year: 2021 (IF.: 4.996 Cit.: 19 DOI: 10.1038/s41598-021-86092-7)

9) A Guide to Perform 3D Histology of Biological Tissues with Fluorescence Microscopy in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
By: Laurino A., Franceschini A., Pesce L., Cinci L., Montalbano A., Mazzamuto G., Sancataldo G., Nesi G., Costantini I., Silvestri L., Pavone FS. Year: 2023 (IF.: 4.900 Cit.: 5 DOI: 10.3390/ijms24076747)

10) Studying the trafficking of labeled trodusquemine and its application as nerve marker for light-sheet and expansion microscopy in FASEB JOURNAL
By: Capitini C., Pesce L., Fani G., Mazzamuto G., Genovese M., Franceschini A., Paoli P., Pieraccini G., Zasloff M., Chiti F., Pavone FS., Calamai M. Year: 2022 (IF.: 4.800 Cit.: 2 DOI: 10.1096/fj.202201276R)

11) Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data in FRONTIERS IN NEUROSCIENCE
By: Bourget MH., Kamentsky L., Ghosh S., Mazzamuto G., Lazari A., Markiewicz CJ., Oostenveld R., Niso G., Halchenko YO., Lipp I., Takerkart S., Toussaint PJ., Khan AR., Nilsonne G., Castelli FM., Cohen-Adad J. Year: 2022 (IF.: 4.300 Cit.: 11 DOI: 10.3389/fnins.2022.871228)

12) A realistic fabrication and design concept for quantum gates based on single emitters integrated in plasmonic-dielectric waveguide structures in SCIENTIFIC REPORTS
By: Kewes G., Schoengen M., Neitzke O., Lombardi P., Schönfeld R.S., Mazzamuto G., Schell A.W., Probst J., Wolters J., Löchel B., Toninelli C., Benson O. Year: 2016 (IF.: 4.259 Cit.: 37 DOI: 10.1038/srep28877)

13) Fiber enhancement and 3D orientation analysis in label-free two-photon fluorescence microscopy in SCIENTIFIC REPORTS
By: Sorelli Michele; Costantini Irene; Bocchi Leonardo; Axer Markus; Pavone Francesco Saverio; Mazzamuto Giacomo Year: 2023 (IF.: 3.800 Cit.: 3 DOI: 10.1038/s41598-023-30953-w)

14) Deducing effective light transport parameters in optically thin systems in NEW JOURNAL OF PHYSICS
By: Mazzamuto G., Pattelli L., Toninelli C., Wiersma D. Year: 2016 (IF.: 3.786 Cit.: 11 DOI: 10.1088/1367-2630/18/2/023036)

15) Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture in BIOMEDICAL OPTICS EXPRESS
By: Costantini I., Mazzamuto G., Roffilli M., Laurino A., Castelli FM., Neri M., Lughi G., Simonetto A., Lazzeri E., Pesce L., Destrieux C., Silvestri L., Conti V., Guerrini R., Pavone FS Year: 2021 (IF.: 3.562 Cit.: 17 DOI: 10.1364/BOE.415555)

16) Single-molecule study for a graphene-based nano-position sensor in NEW JOURNAL OF PHYSICS
By: Mazzamuto G., Tabani A., Pazzagli S., Rizvi S., Reserbat-Plantey A., Schädler K., Navickaite G., Gaudreau L., Cataliotti F.S., Koppens F., Toninelli C. Year: 2014 (IF.: 3.558 Cit.: 22 DOI: 10.1088/1367-2630/16/11/113007)

17) Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques in FRONTIERS IN NEUROANATOMY
By: Scardigli M., Pesce L., Brady N., Mazzamuto G., Gavryusev V., Silvestri L., Hof PR., Destrieux C., Costantini I., Pavone FS. Year: 2021 (IF.: 3.543 Cit.: 9 DOI: 10.3389/fnana.2021.752234)

18) Experimental imaging and Monte Carlo modeling of ultrafast pulse propagation in thin scattering slabs in JOURNAL OF BIOMEDICAL OPTICS
By: Pattelli L., Mazzamuto G. Year: 2022 (IF.: 3.500 Cit.: 3 DOI: 10.1117/1.JBO.27.8.083020)

19) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESS
By: De Vito G., Turrini L., Müllenbroich C., Ricci P., Sancataldo G., Mazzamuto G., Tiso N., Sacconi L., Fanelli D., Silvestri L., Vanzi F., Pavone F.S. Year: 2022 (IF.: 3.400 Cit.: 15 DOI: 10.1364/BOE.434146)

20) Diffusive light transport in semitransparent media in PHYSICAL REVIEW A
By: Pattelli L., Mazzamuto G., Wiersma D., Toninelli C. Year: 2016 (IF.: 2.925 Cit.: 8 DOI: 10.1103/PhysRevA.94.043846)

21) CELES: CUDA-accelerated simulation of electromagnetic scattering by large ensembles of spheres in JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER
By: Egel A., Pattelli L., Mazzamuto G., Wiersma D.S., Lemmer U. Year: 2017 (IF.: 2.600 Cit.: 70 DOI: 10.1016/j.jqsrt.2017.05.010)

22) High-fidelity imaging in brain-wide structural studies using light-sheet microscopy in ENEURO
By: Müllenbroich M.C., Silvestri L., Di Giovanna A.P., Mazzamuto G., Costantini I., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 13 DOI: 10.1523/ENEURO.0124-18.2018)

23) Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference in SCIENTIFIC REPORTS
By: Checcucci C., Wicinski B., Mazzamuto G., Scardigli M., Ramazzotti J., Brady N., Pavone FS., Hof PR., Costantini I., Frasconi P. Year: 2024 (Cit.: 3 DOI: 10.1038/s41598-024-65092-3)

24) Non-self-similar light transport in scattering media in PHYSICAL REVIEW RESEARCH
By: Pini E., Mazzamuto G., Riboli F., Wiersma DS., Pattelli L. Year: 2024 (Cit.: 2 DOI: 10.1103/PhysRevResearch.6.L032026)

25) Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging in JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
By: Di Meo D., Ramazzotti J., Scardigli M., Cheli F., Pesce L., Brady N., Mazzamuto G., Costantini I., Pavone FS. Year: 2024 (Cit.: 2 DOI: 10.3791/65960)

26) Segmentation of supragranular and infragranular layers in ultra-high-resolution 7T ex vivo MRI of the human cerebral cortex in CEREBRAL CORTEX
By: Zeng XR., Puonti O., Sayeed A., Herisse R., Mora J., Evancic K., Varadarajan D., Balbastre Y., Costantini I., Scardigli M., Ramazzotti J., Di Meo D., Mazzamuto G., Pesce L., Brady N., Cheli F., Pavone F.S., Hof P.R., Frost R., Augustinack J., Van der Kouwe A., Iglesias J.E., Fischl B. Year: 2024 (Cit.: 2 DOI: 10.1093/cercor/bhae362)

27) Mapping brain state-dependent sensory responses across the mouse cortex in ISCIENCE
By: Montagni E., Resta F., Tort-Colet N., Scaglione A., Mazzamuto G., Destexhe A., Pavone FS., Mascaro ALA. Year: 2024 (Cit.: 1 DOI: 10.1016/j.isci.2024.109692)

28) Deep learning strategies for scalable analysis of high-resolution brain imagery
in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Mazzamuto G., Orsini F., Roffilli M., Frasconi P., Pavone F. S., Silvestri S. Year: 2019 29) Three-dimensional analysis of human brain cytoarchitectonics by means of a SWITCH/TDE-combined clearing method in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Costantini I., Mazzamuto G., Laurino A., Lazzari E., Sacconi L., Neri M., Simonetto A., Ruffilli M., Silvestri L., Pavone FS. Year: 2019 30) 3D human brain digital istopatology in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Costantini I., Mazzamuto G., Silvestri L., Neri M., Roffilli M., Conti V., Guerrini R., Sacconi L., Pavone F.S. Year: 2018 ( DOI: 10.1364/BRAIN.2018.BF4C.1)

31) Automatic Segmentation of Neurons in 3D Samples of Human Brain Cortex in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Mazzamuto G., Costantini I., Neri M., Roffilli M., Silvestri L., Pavone F.S. Year: 2018 32) Software tools for efficient processing of high-resolution 3D images of macroscopic brain samples in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Mazzamuto G., Silvestri L., Costantini I., Orsini F., Roffilli M., Frasconi P., Sacconi L., Pavone F.S. Year: 2018 33) Towards a full volumetric atlas of cell-specific neuronal spatial organization in the entire mouse brain in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Silvestri L., Di Giovanna A.P., Mazzamuto G., Leergard T., Orsini F., Costantini I., Bjaalie J., Frasconi P., Pavone F.S. Year: 2018 34) Whole heart cytoarchitecture at sub-cellular resolution in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Lazzeri E., Costantini I., Cannazzaro S., Ferrantini C., Mazzamuto G., Crocini C., Cerbai E., Poggesi C., Pavone FS., Sacconi L. Year: 2018 35) Photostable molecules on chip: Integrated single photon sources for quantum technologies in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Lombardi P., Ovvyan A.P., Pazzagli S., Mazzamuto G., Kewes G., Neitzke O., Gruhler N., Benson O., Pernice W.H.P., Cataliotti F.S., Toninelli C. Year: 2017 36) Coupling of single DBT molecules to a graphene monolayer: proof of principle for a graphene nanoruler.
in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS
By: Mazzamuto G., Tabani A., Pazzagli S., Rizvi S., Raserbat-Plantey A., Schaedler K., Navickaite G., Gaudreau L., Cataliotti F., Koppens F., Toninelli C. Year: 2014